Gene technologyEdexcel A-Level Biology B: Revision notes
Section 1
Making recombinant DNA
Recombinant DNA is DNA that contains genes from two different sources. It is made in four steps:
- A restriction endonuclease cuts the DNA at a specific recognition sequence, isolating the gene. Many enzymes cut unevenly to leave single-stranded sticky ends.
- The same enzyme cuts the vector (for example a plasmid), so its sticky ends are complementary to those of the gene.
- The gene and vector are mixed and the sticky ends anneal by complementary base pairing.
- DNA ligase forms phosphodiester bonds to join the sugar-phosphate backbones.
The recombinant plasmid can then be inserted into bacteria, which make the protein, for example human insulin.
Restriction endonucleases cut; DNA ligase joins. Do not swap them. Sticky ends are held together by hydrogen bonds before the ligase makes covalent bonds.
Section 2
Vectors: getting the DNA into cells
A vector carries the recombinant DNA into a host cell.
- Plasmids: small circular DNA from bacteria, taken up by bacteria.
- Viruses: modified so that they cannot cause disease but still insert their DNA, with the new gene, into host cells (for example in gene therapy).
- Gene guns: tiny particles of gold or tungsten coated with the DNA are fired into plant cells, where the DNA can enter the nucleus and be incorporated into a chromosome.
Only a small proportion of the cells take up the DNA, so the cells that have done so must be identified.
Section 3
Identifying recombinant cells: marker genes and replica plating
A plasmid can carry two antibiotic resistance genes, for example for ampicillin and tetracycline. The human gene is inserted into the middle of the tetracycline resistance gene, which is then inactivated.
- Bacteria are spread on agar containing ampicillin (the master plate). Only bacteria that took up a plasmid, recombinant or not, grow.
- A velvet pad copies the colonies, in the same positions, on to agar containing tetracycline (replica plating).
- Colonies that grow on ampicillin but not on tetracycline contain recombinant plasmids. Colonies that grow on both have non-recombinant plasmids.
- The recombinant colonies are picked from the master plate.
Recombinant means the tetracycline gene has been broken, so look for the colony that survives ampicillin but dies on tetracycline.
Section 4
Knockout mice
A knockout mouse has had a gene inactivated (knocked out) in all its cells. Comparing its phenotype with a normal (wild type) mouse shows what the gene normally does. Mice are used as an animal model because they are mammals with genes similar to humans, breed quickly and are small.
Limitations: mice are not humans, so the gene may act differently; other genes may compensate; a gene may have several functions; and the knockout may be lethal before birth. There are also ethical issues about animal suffering and the use of animals, which is why such work is regulated.
Section 5
Genetically modified soya
Soya beans have been genetically modified for two main reasons.
- Improving production: a bacterial gene for herbicide tolerance is inserted, often with a gene gun. The crop survives spraying but weeds are killed, so there is less competition and a higher yield.
- Improving quality: natural soya oil has many polyunsaturated fatty acids, which are easily oxidised and make products go rancid. The gene for the enzyme converting oleic acid to polyunsaturated acids is silenced, giving a higher proportion of the monounsaturated oleic acid, which is more stable, so the oil lasts longer.
Section 6
The GM debate
Widespread use of genetic modification in major crops and other transgenic organisms is debated.
Advantages: higher yields to feed a growing population, less use of pesticides or fewer cultivations, longer shelf life, improved nutrition and use of marginal land.
Disadvantages: gene flow to wild relatives and weeds producing herbicide-resistant weeds, effects on non-target organisms and biodiversity, expensive patented seed that makes farmers dependent on companies, and concern about eating GM food.
Examiners expect balanced, reasoned points and a conclusion supported by them.
That's the notes covered.
Carry on to the next subtopic.
Exam questions on Gene technology
- Scientists want bacteria to make human insulin. They cut the human insulin gene out of human DNA and cut a bacterial plasmid with the same restriction endonuclease. The enzyme cuts at a specific recognition sequence and leaves short single-stranded overhangs at each end of the cut DNA.Explain why the same restriction endonuclease is used to cut both the human DNA and the plasmid.2 marks
- A plasmid carries two antibiotic resistance genes, one for ampicillin and one for tetracycline. A human gene is inserted into the middle of the tetracycline resistance gene. Bacteria are mixed with the plasmids and spread on agar containing ampicillin (the master plate). Colonies are then transferred by pressing a sterile velvet pad first on the master plate and then on agar containing tetracycline (the replica plate), keeping the positions of the colonies.Explain why bacteria containing a plasmid without the human gene grow on both plates.2 marks
- Researchers have identified a human gene, called gene X, which they think is involved in the development of the heart. They produce knockout mice in which gene X has been inactivated in every cell and compare the mice with normal mice.Explain how the knockout mice can be used to find out the function of gene X.3 marks
Written by the Exaim team, led by Shaun Daswani (Head of Upper Secondary, Improve ME Institute; MSc Financial Mathematics, Imperial College London; BSc, UCL) and Jason Daswani (operational lead, Improve ME Institute; LSE).